Maayan Vidal Protein Interaction Network
A Human protein interaction network (Vidal lab) dataset of 3,133 nodes and 6,726 edges, collected by M. Vidal et al.. Each record contains directed: False, weighted: False. Human protein-protein interaction network from the Vidal lab — classic biological network benchmark.. Suitable for biological network analysis, protein interaction research.
Cite this dataset at
maayan-vidal.echo.directory
Analytics
The full graph has 3,133 nodes; this view shows the 1,000-node sample the pipeline drew for display. Node size is centrality, colour is community.
Computed over the full corpus.
Record
- Catalog key
maayan-vidal- Authors
- Rual, Jean-François; Venkatesan, Kavitha; Hao, Tong; Hirozane-Kishikawa, Tomoko; Dricot, Amélie; Li, Ning; Berriz, Gabriel F.; Gibbons, Francis D.; Dreze, Matija; Ayivi-Guedehoussou, Nono; Klitgord, Niels; Simon, Christophe; Boxem, Mike; Milstein, Stuart; Rosenberg, Jennifer; Goldberg, Debra S.; Zhang, Lan V.; Wong, Sharyl L.; Franklin, Giovanni; Li, Siming; Albala, Joanna S.; Lim, Janghoo; Fraughton, Carlene; Llamosas, Estelle; Cevik, Sebiha; Bex, Camille; Lamesch, Philippe; Sikorski, Robert S.; Vandenhaute, Jean; Zoghbi, Huda Y.; Smolyar, Alex; Bosak, Stephanie; Sequerra, Reynaldo; Doucette-Stamm, Lynn; Cusick, Michael E.; Hill, David E.; Roth, Frederick P.; Vidal, Marc
- Year
- 2005
- Source paper
- Towards a proteome-scale map of the human protein–protein interaction network
- DOI / arXiv
- 10.1038/nature04209
- License
- CC BY-SA 2.0 Germany (as stated by KONECT) (LicenseRef-CC-BY-SA-2.0-DE)
- Records
- 3,133
- Nodes
- 3,133
- Edges
- 6,726
- Nodes are
- protein
- Edges are
- protein interaction
- Attributes
- nodes have no attributes; edges have no attributes
- Languages
- en
- Collected
- 2005 (2000s)
- Tasks
- From the graph: link prediction, community detection
Provenance
- Originally published at
- https://konect.cc/networks/maayan-vidal/ unverified
- Hosted copy
- Mirrored on echo.directory on 2026-10-02, 22.9 KB across 1 files. Checksums in MANIFEST.json.
Citations
Towards a proteome-scale map of the human protein–protein interaction network
Jean-François Rual, K. Venkatesan, T. Hao, T. Hirozane-Kishikawa, A. Dricot
Journal Article · Nature · 2005
Cited by
- Supplementary Figure S2
Krishan Parashar, A. E. Torres et al. · 2020 · cited 1.1K× - A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim et al. · Nature · 2020 · cited 1.1K× - Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, R. Bruckner et al. · bioRxiv · 2020 · cited 867× - Recent advances in the development of protein–protein interactions modulators: mechanisms and clinical trials
Haiying Lu, Qiaodan Zhou et al. · Signal Transduction and Targeted Therapy · 2020 · cited 757× - Target identification among known drugs by deep learning from heterogeneous networks
Xiangxiang Zeng, Siyi Zhu et al. · Chemical Science · 2020 · cited 269×
Show all 10
- Prebiotic Peptides: Molecular Hubs in the Origin of Life.
Moran Frenkel-Pinter, Mousumi Samanta et al. · Chemical Reviews · 2020 · cited 258× - LightGBM-PPI: Predicting protein-protein interactions through LightGBM with multi-information fusion
Cheng Chen, Qingmei Zhang et al. · Chemometrics and Intelligent Laboratory Systems · 2019 · cited 242× - Systems biology in cardiovascular disease: a multiomics approach
A. Joshi, M. Rienks et al. · Nature Reviews Cardiology · 2020 · cited 235× - BNIP3L/NIX-mediated mitophagy: molecular mechanisms and implications for human disease
Yue Li, Wanqing Zheng et al. · Cell Death and Disease · 2021 · cited 201× - Computational network biology: Data, models, and applications
Chuang Liu, Yi-Fang Ma et al. · 2020 · cited 201×
Citation data from Semantic Scholar, retrieved 2026-10-19.
How to cite
BibTeX
@misc{echo2026,
title = {ECHO: Exploratory Compendium of Humanity Online},
author = {Switzer, Braden and Zafarani, Reza},
year = {2026},
url = {https://echo.directory},
note = {Syracuse University}
}
@article{Rual_2005,
title = {Towards a proteome-scale map of the human protein–protein interaction network},
volume = {437},
issn = {1476-4687},
url = {http://dx.doi.org/10.1038/nature04209},
doi = {10.1038/nature04209},
number = {7062},
journal = {Nature},
publisher = {Springer Science and Business Media LLC},
author = {Rual, Jean-François and Venkatesan, Kavitha and Hao, Tong and Hirozane-Kishikawa, Tomoko and Dricot, Amélie and Li, Ning and Berriz, Gabriel F. and Gibbons, Francis D. and Dreze, Matija and Ayivi-Guedehoussou, Nono and Klitgord, Niels and Simon, Christophe and Boxem, Mike and Milstein, Stuart and Rosenberg, Jennifer and Goldberg, Debra S. and Zhang, Lan V. and Wong, Sharyl L. and Franklin, Giovanni and Li, Siming and Albala, Joanna S. and Lim, Janghoo and Fraughton, Carlene and Llamosas, Estelle and Cevik, Sebiha and Bex, Camille and Lamesch, Philippe and Sikorski, Robert S. and Vandenhaute, Jean and Zoghbi, Huda Y. and Smolyar, Alex and Bosak, Stephanie and Sequerra, Reynaldo and Doucette-Stamm, Lynn and Cusick, Michael E. and Hill, David E. and Roth, Frederick P. and Vidal, Marc},
year = {2005},
month = Sept,
pages = {1173–1178}
} APA
Switzer, B., & Zafarani, R. (2026). ECHO: Exploratory Compendium of Humanity Online [Data repository]. Syracuse University. https://echo.directory
Rual, J.-F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., Berriz, G. F., Gibbons, F. D., Dreze, M., Ayivi-Guedehoussou, N., Klitgord, N., Simon, C., Boxem, M., Milstein, S., Rosenberg, J., Goldberg, D. S., Zhang, L. V., Wong, S. L., Franklin, G., . . . Vidal, M. (2005). Maayan Vidal Protein Interaction Network [Data set]. https://doi.org/10.1038/nature04209
MLA
Switzer, Braden, and Reza Zafarani. ECHO: Exploratory Compendium of Humanity Online. Syracuse University, 2026, echo.directory.
Rual, Jean-François, et al. Maayan Vidal Protein Interaction Network. 2005, doi.org/10.1038/nature04209.
