Maayan Vidal Protein Interaction Network

AnalyzedSmallgraphSocial graph

A Human protein interaction network (Vidal lab) dataset of 3,133 nodes and 6,726 edges, collected by M. Vidal et al.. Each record contains directed: False, weighted: False. Human protein-protein interaction network from the Vidal lab — classic biological network benchmark.. Suitable for biological network analysis, protein interaction research.

#Biological network#Protein interaction

Download data BibTeX JSONSimilar datasets

Analytics

The interactive network needs JavaScript.

· graph.json

The full graph has 3,133 nodes; this view shows the 1,000-node sample the pipeline drew for display. Node size is centrality, colour is community.

3.1K
Nodes
6.7K
Edges
1.37e-03
Density
210
Components
-0.114
Assortativity
0.0%
Reciprocity
1.2K
Bridges
Most central nodes
150.04119
1820.03129
2710.03065
1750.02937
6310.0249
1240.02395
1330.02075
340.02075
1420.01916
1300.0166

Computed over the full corpus.

Record

Catalog key
maayan-vidal
Authors
Rual, Jean-François; Venkatesan, Kavitha; Hao, Tong; Hirozane-Kishikawa, Tomoko; Dricot, Amélie; Li, Ning; Berriz, Gabriel F.; Gibbons, Francis D.; Dreze, Matija; Ayivi-Guedehoussou, Nono; Klitgord, Niels; Simon, Christophe; Boxem, Mike; Milstein, Stuart; Rosenberg, Jennifer; Goldberg, Debra S.; Zhang, Lan V.; Wong, Sharyl L.; Franklin, Giovanni; Li, Siming; Albala, Joanna S.; Lim, Janghoo; Fraughton, Carlene; Llamosas, Estelle; Cevik, Sebiha; Bex, Camille; Lamesch, Philippe; Sikorski, Robert S.; Vandenhaute, Jean; Zoghbi, Huda Y.; Smolyar, Alex; Bosak, Stephanie; Sequerra, Reynaldo; Doucette-Stamm, Lynn; Cusick, Michael E.; Hill, David E.; Roth, Frederick P.; Vidal, Marc
Year
2005
Source paper
Towards a proteome-scale map of the human protein–protein interaction network
DOI / arXiv
10.1038/nature04209
License
CC BY-SA 2.0 Germany (as stated by KONECT) (LicenseRef-CC-BY-SA-2.0-DE)
Records
3,133
Nodes
3,133
Edges
6,726
Nodes are
protein
Edges are
protein interaction
Attributes
nodes have no attributes; edges have no attributes
Languages
en
Collected
2005 (2000s)
Tasks
From the graph: link prediction, community detection

Provenance

Originally published at
https://konect.cc/networks/maayan-vidal/ unverified
Hosted copy
Mirrored on echo.directory on 2026-10-02, 22.9 KB across 1 files. Checksums in MANIFEST.json.

Citations

Towards a proteome-scale map of the human protein–protein interaction network
Jean-François Rual, K. Venkatesan, T. Hao, T. Hirozane-Kishikawa, A. Dricot
Journal Article · Nature · 2005

3K
citations
highly cited
106
influential citations
3% of all citations

Cited by

Show all 10

Citation data from Semantic Scholar, retrieved 2026-10-19.

How to cite

BibTeX

@misc{echo2026,
  title  = {ECHO: Exploratory Compendium of Humanity Online},
  author = {Switzer, Braden and Zafarani, Reza},
  year   = {2026},
  url    = {https://echo.directory},
  note   = {Syracuse University}
}

@article{Rual_2005,
  title     = {Towards a proteome-scale map of the human protein–protein interaction network},
  volume    = {437},
  issn      = {1476-4687},
  url       = {http://dx.doi.org/10.1038/nature04209},
  doi       = {10.1038/nature04209},
  number    = {7062},
  journal   = {Nature},
  publisher = {Springer Science and Business Media LLC},
  author    = {Rual, Jean-François and Venkatesan, Kavitha and Hao, Tong and Hirozane-Kishikawa, Tomoko and Dricot, Amélie and Li, Ning and Berriz, Gabriel F. and Gibbons, Francis D. and Dreze, Matija and Ayivi-Guedehoussou, Nono and Klitgord, Niels and Simon, Christophe and Boxem, Mike and Milstein, Stuart and Rosenberg, Jennifer and Goldberg, Debra S. and Zhang, Lan V. and Wong, Sharyl L. and Franklin, Giovanni and Li, Siming and Albala, Joanna S. and Lim, Janghoo and Fraughton, Carlene and Llamosas, Estelle and Cevik, Sebiha and Bex, Camille and Lamesch, Philippe and Sikorski, Robert S. and Vandenhaute, Jean and Zoghbi, Huda Y. and Smolyar, Alex and Bosak, Stephanie and Sequerra, Reynaldo and Doucette-Stamm, Lynn and Cusick, Michael E. and Hill, David E. and Roth, Frederick P. and Vidal, Marc},
  year      = {2005},
  month     = Sept,
  pages     = {1173–1178}
}

APA

Switzer, B., & Zafarani, R. (2026). ECHO: Exploratory Compendium of Humanity Online [Data repository]. Syracuse University. https://echo.directory

Rual, J.-F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., Berriz, G. F., Gibbons, F. D., Dreze, M., Ayivi-Guedehoussou, N., Klitgord, N., Simon, C., Boxem, M., Milstein, S., Rosenberg, J., Goldberg, D. S., Zhang, L. V., Wong, S. L., Franklin, G., . . . Vidal, M. (2005). Maayan Vidal Protein Interaction Network [Data set]. https://doi.org/10.1038/nature04209

MLA

Switzer, Braden, and Reza Zafarani. ECHO: Exploratory Compendium of Humanity Online. Syracuse University, 2026, echo.directory.

Rual, Jean-François, et al. Maayan Vidal Protein Interaction Network. 2005, doi.org/10.1038/nature04209.

BibTeX · RIS · CSL-JSON

Similar datasets 10 all with scores →